Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Identifieur interne : 006197 ( Main/Exploration ); précédent : 006196; suivant : 006198Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Auteurs : Christian P. Kubicek [Autriche] ; Alfredo Herrera-Estrella [Mexique] ; Verena Seidl-Seiboth [Autriche] ; Diego A. Martinez [États-Unis] ; Irina S. Druzhinina [Autriche] ; Michael Thon [Espagne] ; Susanne Zeilinger [Autriche] ; Sergio Casas-Flores [Mexique] ; Benjamin A. Horwitz [Israël] ; Prasun K. Mukherjee [Inde] ; Mala Mukherjee [Israël] ; Lászl Kredics [Hongrie] ; Luis D. Alcaraz [Mexique] ; Andrea Aerts [États-Unis] ; Zsuzsanna Antal [Hongrie] ; Lea Atanasova [Autriche] ; Mayte G. Cervantes-Badillo [Mexique] ; Jean Challacombe [États-Unis] ; Olga Chertkov [États-Unis] ; Kevin Mccluskey [États-Unis] ; Fanny Coulpier [France] ; Nandan Deshpande [Australie] ; Hans Von Döhren [Allemagne] ; Daniel J. Ebbole [États-Unis] ; Edgardo U. Esquivel-Naranjo [Mexique] ; Erzsébet Fekete [Hongrie] ; Michel Flipphi [Espagne] ; Fabian Glaser [Israël] ; Elida Y. G Mez-Rodríguez [Mexique] ; Sabine Gruber [Autriche] ; Cliff Han [États-Unis] ; Bernard Henrissat [France] ; Rosa Hermosa [Espagne] ; Miguel Hernández-O Ate [Mexique] ; Levente Karaffa [Hongrie] ; Idit Kosti [Israël] ; Stéphane Le Crom [France] ; Erika Lindquist [États-Unis] ; Susan Lucas [États-Unis] ; Mette Lübeck [Danemark] ; Peter S. Lübeck [Danemark] ; Antoine Margeot [France] ; Benjamin Metz [Autriche] ; Monica Misra [États-Unis] ; Helena Nevalainen [Australie] ; Markus Omann [Autriche] ; Nicolle Packer [Australie] ; Giancarlo Perrone [Italie] ; Edith E. Uresti-Rivera [Mexique] ; Asaf Salamov [États-Unis] ; Monika Schmoll [Autriche] ; Bernhard Seiboth [Autriche] ; Harris Shapiro [États-Unis] ; Serenella Sukno [Espagne] ; Juan Antonio Tamayo-Ramos [Pays-Bas] ; Doris Tisch [Autriche] ; Aric Wiest [États-Unis] ; Heather H. Wilkinson [États-Unis] ; Michael Zhang [États-Unis] ; Pedro M. Coutinho [France] ; Charles M. Kenerley [États-Unis] ; Enrique Monte [Espagne] ; Scott E. Baker [États-Unis] ; Igor V. Grigoriev [États-Unis]Source :
- Genome Biology [ 1465-6906 ] ; 2011.
Abstract
Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus
Here we report an analysis of the genome sequences of the two biocontrol species
The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants.
Url:
DOI: 10.1186/gb-2011-12-4-r40
PubMed: 21501500
PubMed Central: 3218866
Affiliations:
- Allemagne, Australie, Autriche, Danemark, Espagne, France, Hongrie, Inde, Israël, Italie, Mexique, Pays-Bas, États-Unis
- Berlin, Californie, Gueldre (province), Jutland du Nord, Massachusetts, Missouri (État), Provence-Alpes-Côte d'Azur, Texas, Vienne (Autriche), Washington (État), Île-de-France
- Aalborg, Berlin, Marseille, Marseille 13288, Paris, Vienne (Autriche), Wageningue
- Université d'Aalborg, Université de Wageningue, Université de la Méditerranée
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 002553
- to stream Pmc, to step Curation: 002403
- to stream Pmc, to step Checkpoint: 002366
- to stream Ncbi, to step Merge: 000A38
- to stream Ncbi, to step Curation: 000A38
- to stream Ncbi, to step Checkpoint: 000A38
- to stream Main, to step Merge: 006561
- to stream Main, to step Curation: 006197
Le document en format XML
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Cervantes-Badillo</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Challacombe, Jean" sort="Challacombe, Jean" uniqKey="Challacombe J" first="Jean" last="Challacombe">Jean Challacombe</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Chertkov, Olga" sort="Chertkov, Olga" uniqKey="Chertkov O" first="Olga" last="Chertkov">Olga Chertkov</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Mccluskey, Kevin" sort="Mccluskey, Kevin" uniqKey="Mccluskey K" first="Kevin" last="Mccluskey">Kevin Mccluskey</name><affiliation wicri:level="2"><nlm:aff id="I10">School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Coulpier, Fanny" sort="Coulpier, Fanny" uniqKey="Coulpier F" first="Fanny" last="Coulpier">Fanny Coulpier</name><affiliation wicri:level="3"><nlm:aff id="I11">Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Deshpande, Nandan" sort="Deshpande, Nandan" uniqKey="Deshpande N" first="Nandan" last="Deshpande">Nandan Deshpande</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Von Dohren, Hans" sort="Von Dohren, Hans" uniqKey="Von Dohren H" first="Hans" last="Von Döhren">Hans Von Döhren</name><affiliation wicri:level="3"><nlm:aff id="I13">TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587 Berlin, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587 Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Ebbole, Daniel J" sort="Ebbole, Daniel J" uniqKey="Ebbole D" first="Daniel J" last="Ebbole">Daniel J. Ebbole</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Esquivel Naranjo, Edgardo U" sort="Esquivel Naranjo, Edgardo U" uniqKey="Esquivel Naranjo E" first="Edgardo U" last="Esquivel-Naranjo">Edgardo U. Esquivel-Naranjo</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Fekete, Erzsebet" sort="Fekete, Erzsebet" uniqKey="Fekete E" first="Erzsébet" last="Fekete">Erzsébet Fekete</name><affiliation wicri:level="1"><nlm:aff id="I15">Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010</wicri:regionArea><wicri:noRegion>H-4010</wicri:noRegion></affiliation></author><author><name sortKey="Flipphi, Michel" sort="Flipphi, Michel" uniqKey="Flipphi M" first="Michel" last="Flipphi">Michel Flipphi</name><affiliation wicri:level="1"><nlm:aff id="I16">Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot (Valencia) E-46100, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot (Valencia) E-46100</wicri:regionArea><wicri:noRegion>Burjassot (Valencia) E-46100</wicri:noRegion></affiliation></author><author><name sortKey="Glaser, Fabian" sort="Glaser, Fabian" uniqKey="Glaser F" first="Fabian" last="Glaser">Fabian Glaser</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="G Mez Rodriguez, Elida Y" sort="G Mez Rodriguez, Elida Y" uniqKey="G Mez Rodriguez E" first="Elida Y" last="G Mez-Rodríguez">Elida Y. G Mez-Rodríguez</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Gruber, Sabine" sort="Gruber, Sabine" uniqKey="Gruber S" first="Sabine" last="Gruber">Sabine Gruber</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Han, Cliff" sort="Han, Cliff" uniqKey="Han C" first="Cliff" last="Han">Cliff Han</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation wicri:level="4"><nlm:aff id="I17">Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille 13288</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Hermosa, Rosa" sort="Hermosa, Rosa" uniqKey="Hermosa R" first="Rosa" last="Hermosa">Rosa Hermosa</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Hernandez O Ate, Miguel" sort="Hernandez O Ate, Miguel" uniqKey="Hernandez O Ate M" first="Miguel" last="Hernández-O Ate">Miguel Hernández-O Ate</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Karaffa, Levente" sort="Karaffa, Levente" uniqKey="Karaffa L" first="Levente" last="Karaffa">Levente Karaffa</name><affiliation wicri:level="1"><nlm:aff id="I15">Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010</wicri:regionArea><wicri:noRegion>H-4010</wicri:noRegion></affiliation></author><author><name sortKey="Kosti, Idit" sort="Kosti, Idit" uniqKey="Kosti I" first="Idit" last="Kosti">Idit Kosti</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="Le Crom, Stephane" sort="Le Crom, Stephane" uniqKey="Le Crom S" first="Stéphane" last="Le Crom">Stéphane Le Crom</name><affiliation wicri:level="1"><nlm:aff id="I11">Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005</wicri:regionArea><wicri:noRegion>75005</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lucas, Susan" sort="Lucas, Susan" uniqKey="Lucas S" first="Susan" last="Lucas">Susan Lucas</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lubeck, Mette" sort="Lubeck, Mette" uniqKey="Lubeck M" first="Mette" last="Lübeck">Mette Lübeck</name><affiliation wicri:level="4"><nlm:aff id="I18">Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup, Denmark</nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup</wicri:regionArea><orgName type="university">Université d'Aalborg</orgName><placeName><settlement type="city">Aalborg</settlement><region nuts="2" type="region">Jutland du Nord</region></placeName></affiliation></author><author><name sortKey="Lubeck, Peter S" sort="Lubeck, Peter S" uniqKey="Lubeck P" first="Peter S" last="Lübeck">Peter S. Lübeck</name><affiliation wicri:level="4"><nlm:aff id="I18">Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup, Denmark</nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup</wicri:regionArea><orgName type="university">Université d'Aalborg</orgName><placeName><settlement type="city">Aalborg</settlement><region nuts="2" type="region">Jutland du Nord</region></placeName></affiliation></author><author><name sortKey="Margeot, Antoine" sort="Margeot, Antoine" uniqKey="Margeot A" first="Antoine" last="Margeot">Antoine Margeot</name><affiliation wicri:level="1"><nlm:aff id="I19">Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852</wicri:regionArea><wicri:noRegion>92852</wicri:noRegion><wicri:noRegion>92852</wicri:noRegion></affiliation></author><author><name sortKey="Metz, Benjamin" sort="Metz, Benjamin" uniqKey="Metz B" first="Benjamin" last="Metz">Benjamin Metz</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Misra, Monica" sort="Misra, Monica" uniqKey="Misra M" first="Monica" last="Misra">Monica Misra</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Nevalainen, Helena" sort="Nevalainen, Helena" uniqKey="Nevalainen H" first="Helena" last="Nevalainen">Helena Nevalainen</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Omann, Markus" sort="Omann, Markus" uniqKey="Omann M" first="Markus" last="Omann">Markus Omann</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Packer, Nicolle" sort="Packer, Nicolle" uniqKey="Packer N" first="Nicolle" last="Packer">Nicolle Packer</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Perrone, Giancarlo" sort="Perrone, Giancarlo" uniqKey="Perrone G" first="Giancarlo" last="Perrone">Giancarlo Perrone</name><affiliation wicri:level="1"><nlm:aff id="I20">Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola 122/O, 70126 Bari, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola 122/O, 70126 Bari</wicri:regionArea><wicri:noRegion>70126 Bari</wicri:noRegion></affiliation></author><author><name sortKey="Uresti Rivera, Edith E" sort="Uresti Rivera, Edith E" uniqKey="Uresti Rivera E" first="Edith E" last="Uresti-Rivera">Edith E. Uresti-Rivera</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Schmoll, Monika" sort="Schmoll, Monika" uniqKey="Schmoll M" first="Monika" last="Schmoll">Monika Schmoll</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Seiboth, Bernhard" sort="Seiboth, Bernhard" uniqKey="Seiboth B" first="Bernhard" last="Seiboth">Bernhard Seiboth</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Shapiro, Harris" sort="Shapiro, Harris" uniqKey="Shapiro H" first="Harris" last="Shapiro">Harris Shapiro</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Sukno, Serenella" sort="Sukno, Serenella" uniqKey="Sukno S" first="Serenella" last="Sukno">Serenella Sukno</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Tamayo Ramos, Juan Antonio" sort="Tamayo Ramos, Juan Antonio" uniqKey="Tamayo Ramos J" first="Juan Antonio" last="Tamayo-Ramos">Juan Antonio Tamayo-Ramos</name><affiliation wicri:level="4"><nlm:aff id="I21">Wageningen University, Systems and Synthetic Biology, Fungal Systems Biology Group, Dreijenplein 10, 6703 HB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Systems and Synthetic Biology, Fungal Systems Biology Group, Dreijenplein 10, 6703 HB Wageningen</wicri:regionArea><orgName type="university">Université de Wageningue</orgName><placeName><settlement type="city">Wageningue</settlement><region nuts="2">Gueldre (province)</region></placeName></affiliation></author><author><name sortKey="Tisch, Doris" sort="Tisch, Doris" uniqKey="Tisch D" first="Doris" last="Tisch">Doris Tisch</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Wiest, Aric" sort="Wiest, Aric" uniqKey="Wiest A" first="Aric" last="Wiest">Aric Wiest</name><affiliation wicri:level="2"><nlm:aff id="I10">School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Wilkinson, Heather H" sort="Wilkinson, Heather H" uniqKey="Wilkinson H" first="Heather H" last="Wilkinson">Heather H. Wilkinson</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Zhang, Michael" sort="Zhang, Michael" uniqKey="Zhang M" first="Michael" last="Zhang">Michael Zhang</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Coutinho, Pedro M" sort="Coutinho, Pedro M" uniqKey="Coutinho P" first="Pedro M" last="Coutinho">Pedro M. Coutinho</name><affiliation wicri:level="4"><nlm:aff id="I17">Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille 13288</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Kenerley, Charles M" sort="Kenerley, Charles M" uniqKey="Kenerley C" first="Charles M" last="Kenerley">Charles M. Kenerley</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Monte, Enrique" sort="Monte, Enrique" uniqKey="Monte E" first="Enrique" last="Monte">Enrique Monte</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Baker, Scott E" sort="Baker, Scott E" uniqKey="Baker S" first="Scott E" last="Baker">Scott E. Baker</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="I22">Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21501500</idno><idno type="pmc">3218866</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218866</idno><idno type="RBID">PMC:3218866</idno><idno type="doi">10.1186/gb-2011-12-4-r40</idno><date when="2011">2011</date><idno type="wicri:Area/Pmc/Corpus">002553</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002553</idno><idno type="wicri:Area/Pmc/Curation">002403</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002403</idno><idno type="wicri:Area/Pmc/Checkpoint">002366</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">002366</idno><idno type="wicri:Area/Ncbi/Merge">000A38</idno><idno type="wicri:Area/Ncbi/Curation">000A38</idno><idno type="wicri:Area/Ncbi/Checkpoint">000A38</idno><idno type="wicri:doubleKey">1465-6906:2011:Kubicek C:comparative:genome:sequence</idno><idno type="wicri:Area/Main/Merge">006561</idno><idno type="wicri:Area/Main/Curation">006197</idno><idno type="wicri:Area/Main/Exploration">006197</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of <italic>Trichoderma</italic></title><author><name sortKey="Kubicek, Christian P" sort="Kubicek, Christian P" uniqKey="Kubicek C" first="Christian P" last="Kubicek">Christian P. Kubicek</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Herrera Estrella, Alfredo" sort="Herrera Estrella, Alfredo" uniqKey="Herrera Estrella A" first="Alfredo" last="Herrera-Estrella">Alfredo Herrera-Estrella</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Seidl Seiboth, Verena" sort="Seidl Seiboth, Verena" uniqKey="Seidl Seiboth V" first="Verena" last="Seidl-Seiboth">Verena Seidl-Seiboth</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Martinez, Diego A" sort="Martinez, Diego A" uniqKey="Martinez D" first="Diego A" last="Martinez">Diego A. Martinez</name><affiliation wicri:level="2"><nlm:aff id="I3">Broad Institute of MIT and Harvard, 301 Binney St, Cambridge, MA 02142, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Broad Institute of MIT and Harvard, 301 Binney St, Cambridge, MA 02142</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author><author><name sortKey="Druzhinina, Irina S" sort="Druzhinina, Irina S" uniqKey="Druzhinina I" first="Irina S" last="Druzhinina">Irina S. Druzhinina</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Thon, Michael" sort="Thon, Michael" uniqKey="Thon M" first="Michael" last="Thon">Michael Thon</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Zeilinger, Susanne" sort="Zeilinger, Susanne" uniqKey="Zeilinger S" first="Susanne" last="Zeilinger">Susanne Zeilinger</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Casas Flores, Sergio" sort="Casas Flores, Sergio" uniqKey="Casas Flores S" first="Sergio" last="Casas-Flores">Sergio Casas-Flores</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Horwitz, Benjamin A" sort="Horwitz, Benjamin A" uniqKey="Horwitz B" first="Benjamin A" last="Horwitz">Benjamin A. Horwitz</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="Mukherjee, Prasun K" sort="Mukherjee, Prasun K" uniqKey="Mukherjee P" first="Prasun K" last="Mukherjee">Prasun K. Mukherjee</name><affiliation wicri:level="1"><nlm:aff id="I7">Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India</nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085</wicri:regionArea><wicri:noRegion>Mumbai 400085</wicri:noRegion></affiliation></author><author><name sortKey="Mukherjee, Mala" sort="Mukherjee, Mala" uniqKey="Mukherjee M" first="Mala" last="Mukherjee">Mala Mukherjee</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="Kredics, Laszl" sort="Kredics, Laszl" uniqKey="Kredics L" first="Lászl" last="Kredics">Lászl Kredics</name><affiliation wicri:level="1"><nlm:aff id="I8">Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726</wicri:regionArea><wicri:noRegion>H-6726</wicri:noRegion></affiliation></author><author><name sortKey="Alcaraz, Luis D" sort="Alcaraz, Luis D" uniqKey="Alcaraz L" first="Luis D" last="Alcaraz">Luis D. Alcaraz</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Aerts, Andrea" sort="Aerts, Andrea" uniqKey="Aerts A" first="Andrea" last="Aerts">Andrea Aerts</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Antal, Zsuzsanna" sort="Antal, Zsuzsanna" uniqKey="Antal Z" first="Zsuzsanna" last="Antal">Zsuzsanna Antal</name><affiliation wicri:level="1"><nlm:aff id="I8">Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726</wicri:regionArea><wicri:noRegion>H-6726</wicri:noRegion></affiliation></author><author><name sortKey="Atanasova, Lea" sort="Atanasova, Lea" uniqKey="Atanasova L" first="Lea" last="Atanasova">Lea Atanasova</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Cervantes Badillo, Mayte G" sort="Cervantes Badillo, Mayte G" uniqKey="Cervantes Badillo M" first="Mayte G" last="Cervantes-Badillo">Mayte G. Cervantes-Badillo</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Challacombe, Jean" sort="Challacombe, Jean" uniqKey="Challacombe J" first="Jean" last="Challacombe">Jean Challacombe</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Chertkov, Olga" sort="Chertkov, Olga" uniqKey="Chertkov O" first="Olga" last="Chertkov">Olga Chertkov</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Mccluskey, Kevin" sort="Mccluskey, Kevin" uniqKey="Mccluskey K" first="Kevin" last="Mccluskey">Kevin Mccluskey</name><affiliation wicri:level="2"><nlm:aff id="I10">School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Coulpier, Fanny" sort="Coulpier, Fanny" uniqKey="Coulpier F" first="Fanny" last="Coulpier">Fanny Coulpier</name><affiliation wicri:level="3"><nlm:aff id="I11">Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Deshpande, Nandan" sort="Deshpande, Nandan" uniqKey="Deshpande N" first="Nandan" last="Deshpande">Nandan Deshpande</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Von Dohren, Hans" sort="Von Dohren, Hans" uniqKey="Von Dohren H" first="Hans" last="Von Döhren">Hans Von Döhren</name><affiliation wicri:level="3"><nlm:aff id="I13">TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587 Berlin, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587 Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Ebbole, Daniel J" sort="Ebbole, Daniel J" uniqKey="Ebbole D" first="Daniel J" last="Ebbole">Daniel J. Ebbole</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Esquivel Naranjo, Edgardo U" sort="Esquivel Naranjo, Edgardo U" uniqKey="Esquivel Naranjo E" first="Edgardo U" last="Esquivel-Naranjo">Edgardo U. Esquivel-Naranjo</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Fekete, Erzsebet" sort="Fekete, Erzsebet" uniqKey="Fekete E" first="Erzsébet" last="Fekete">Erzsébet Fekete</name><affiliation wicri:level="1"><nlm:aff id="I15">Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010</wicri:regionArea><wicri:noRegion>H-4010</wicri:noRegion></affiliation></author><author><name sortKey="Flipphi, Michel" sort="Flipphi, Michel" uniqKey="Flipphi M" first="Michel" last="Flipphi">Michel Flipphi</name><affiliation wicri:level="1"><nlm:aff id="I16">Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot (Valencia) E-46100, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot (Valencia) E-46100</wicri:regionArea><wicri:noRegion>Burjassot (Valencia) E-46100</wicri:noRegion></affiliation></author><author><name sortKey="Glaser, Fabian" sort="Glaser, Fabian" uniqKey="Glaser F" first="Fabian" last="Glaser">Fabian Glaser</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="G Mez Rodriguez, Elida Y" sort="G Mez Rodriguez, Elida Y" uniqKey="G Mez Rodriguez E" first="Elida Y" last="G Mez-Rodríguez">Elida Y. G Mez-Rodríguez</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Gruber, Sabine" sort="Gruber, Sabine" uniqKey="Gruber S" first="Sabine" last="Gruber">Sabine Gruber</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Han, Cliff" sort="Han, Cliff" uniqKey="Han C" first="Cliff" last="Han">Cliff Han</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation wicri:level="4"><nlm:aff id="I17">Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille 13288</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Hermosa, Rosa" sort="Hermosa, Rosa" uniqKey="Hermosa R" first="Rosa" last="Hermosa">Rosa Hermosa</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Hernandez O Ate, Miguel" sort="Hernandez O Ate, Miguel" uniqKey="Hernandez O Ate M" first="Miguel" last="Hernández-O Ate">Miguel Hernández-O Ate</name><affiliation wicri:level="1"><nlm:aff id="I2">Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato, Mexico</nlm:aff><country xml:lang="fr">Mexique</country><wicri:regionArea>Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821 Irapuato</wicri:regionArea><wicri:noRegion>36821 Irapuato</wicri:noRegion></affiliation></author><author><name sortKey="Karaffa, Levente" sort="Karaffa, Levente" uniqKey="Karaffa L" first="Levente" last="Karaffa">Levente Karaffa</name><affiliation wicri:level="1"><nlm:aff id="I15">Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary</nlm:aff><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010</wicri:regionArea><wicri:noRegion>H-4010</wicri:noRegion></affiliation></author><author><name sortKey="Kosti, Idit" sort="Kosti, Idit" uniqKey="Kosti I" first="Idit" last="Kosti">Idit Kosti</name><affiliation wicri:level="1"><nlm:aff id="I6">Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000</wicri:regionArea><wicri:noRegion>32000</wicri:noRegion></affiliation></author><author><name sortKey="Le Crom, Stephane" sort="Le Crom, Stephane" uniqKey="Le Crom S" first="Stéphane" last="Le Crom">Stéphane Le Crom</name><affiliation wicri:level="1"><nlm:aff id="I11">Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris 75005</wicri:regionArea><wicri:noRegion>75005</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lucas, Susan" sort="Lucas, Susan" uniqKey="Lucas S" first="Susan" last="Lucas">Susan Lucas</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Lubeck, Mette" sort="Lubeck, Mette" uniqKey="Lubeck M" first="Mette" last="Lübeck">Mette Lübeck</name><affiliation wicri:level="4"><nlm:aff id="I18">Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup, Denmark</nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup</wicri:regionArea><orgName type="university">Université d'Aalborg</orgName><placeName><settlement type="city">Aalborg</settlement><region nuts="2" type="region">Jutland du Nord</region></placeName></affiliation></author><author><name sortKey="Lubeck, Peter S" sort="Lubeck, Peter S" uniqKey="Lubeck P" first="Peter S" last="Lübeck">Peter S. Lübeck</name><affiliation wicri:level="4"><nlm:aff id="I18">Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup, Denmark</nlm:aff><country xml:lang="fr">Danemark</country><wicri:regionArea>Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750 Ballerup</wicri:regionArea><orgName type="university">Université d'Aalborg</orgName><placeName><settlement type="city">Aalborg</settlement><region nuts="2" type="region">Jutland du Nord</region></placeName></affiliation></author><author><name sortKey="Margeot, Antoine" sort="Margeot, Antoine" uniqKey="Margeot A" first="Antoine" last="Margeot">Antoine Margeot</name><affiliation wicri:level="1"><nlm:aff id="I19">Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852</wicri:regionArea><wicri:noRegion>92852</wicri:noRegion><wicri:noRegion>92852</wicri:noRegion></affiliation></author><author><name sortKey="Metz, Benjamin" sort="Metz, Benjamin" uniqKey="Metz B" first="Benjamin" last="Metz">Benjamin Metz</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Misra, Monica" sort="Misra, Monica" uniqKey="Misra M" first="Monica" last="Misra">Monica Misra</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Nevalainen, Helena" sort="Nevalainen, Helena" uniqKey="Nevalainen H" first="Helena" last="Nevalainen">Helena Nevalainen</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Omann, Markus" sort="Omann, Markus" uniqKey="Omann M" first="Markus" last="Omann">Markus Omann</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Packer, Nicolle" sort="Packer, Nicolle" uniqKey="Packer N" first="Nicolle" last="Packer">Nicolle Packer</name><affiliation wicri:level="1"><nlm:aff id="I12">Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW 2109</wicri:regionArea><wicri:noRegion>NSW 2109</wicri:noRegion></affiliation></author><author><name sortKey="Perrone, Giancarlo" sort="Perrone, Giancarlo" uniqKey="Perrone G" first="Giancarlo" last="Perrone">Giancarlo Perrone</name><affiliation wicri:level="1"><nlm:aff id="I20">Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola 122/O, 70126 Bari, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola 122/O, 70126 Bari</wicri:regionArea><wicri:noRegion>70126 Bari</wicri:noRegion></affiliation></author><author><name sortKey="Uresti Rivera, Edith E" sort="Uresti Rivera, Edith E" uniqKey="Uresti Rivera E" first="Edith E" last="Uresti-Rivera">Edith E. Uresti-Rivera</name><affiliation wicri:level="1"><nlm:aff id="I5">División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216, México</nlm:aff><country xml:lang="fr" wicri:curation="lc">Mexique</country><wicri:regionArea>División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, SLP., 78216</wicri:regionArea><wicri:noRegion>78216</wicri:noRegion></affiliation></author><author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Schmoll, Monika" sort="Schmoll, Monika" uniqKey="Schmoll M" first="Monika" last="Schmoll">Monika Schmoll</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Seiboth, Bernhard" sort="Seiboth, Bernhard" uniqKey="Seiboth B" first="Bernhard" last="Seiboth">Bernhard Seiboth</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Shapiro, Harris" sort="Shapiro, Harris" uniqKey="Shapiro H" first="Harris" last="Shapiro">Harris Shapiro</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Sukno, Serenella" sort="Sukno, Serenella" uniqKey="Sukno S" first="Serenella" last="Sukno">Serenella Sukno</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Tamayo Ramos, Juan Antonio" sort="Tamayo Ramos, Juan Antonio" uniqKey="Tamayo Ramos J" first="Juan Antonio" last="Tamayo-Ramos">Juan Antonio Tamayo-Ramos</name><affiliation wicri:level="4"><nlm:aff id="I21">Wageningen University, Systems and Synthetic Biology, Fungal Systems Biology Group, Dreijenplein 10, 6703 HB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University, Systems and Synthetic Biology, Fungal Systems Biology Group, Dreijenplein 10, 6703 HB Wageningen</wicri:regionArea><orgName type="university">Université de Wageningue</orgName><placeName><settlement type="city">Wageningue</settlement><region nuts="2">Gueldre (province)</region></placeName></affiliation></author><author><name sortKey="Tisch, Doris" sort="Tisch, Doris" uniqKey="Tisch D" first="Doris" last="Tisch">Doris Tisch</name><affiliation wicri:level="3"><nlm:aff id="I1">Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060 Vienna</wicri:regionArea><placeName><region type="land" nuts="2">Vienne (Autriche)</region><settlement type="city">Vienne (Autriche)</settlement></placeName></affiliation></author><author><name sortKey="Wiest, Aric" sort="Wiest, Aric" uniqKey="Wiest A" first="Aric" last="Wiest">Aric Wiest</name><affiliation wicri:level="2"><nlm:aff id="I10">School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO 64110</wicri:regionArea><placeName><region type="state">Missouri (État)</region></placeName></affiliation></author><author><name sortKey="Wilkinson, Heather H" sort="Wilkinson, Heather H" uniqKey="Wilkinson H" first="Heather H" last="Wilkinson">Heather H. Wilkinson</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Zhang, Michael" sort="Zhang, Michael" uniqKey="Zhang M" first="Michael" last="Zhang">Michael Zhang</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Coutinho, Pedro M" sort="Coutinho, Pedro M" uniqKey="Coutinho P" first="Pedro M" last="Coutinho">Pedro M. Coutinho</name><affiliation wicri:level="4"><nlm:aff id="I17">Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille 13288</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille 13288</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Kenerley, Charles M" sort="Kenerley, Charles M" uniqKey="Kenerley C" first="Charles M" last="Kenerley">Charles M. Kenerley</name><affiliation wicri:level="2"><nlm:aff id="I14">Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology Building 0444, Nagle Street, Texas A&M University College Station, TX 77843</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Monte, Enrique" sort="Monte, Enrique" uniqKey="Monte E" first="Enrique" last="Monte">Enrique Monte</name><affiliation wicri:level="1"><nlm:aff id="I4">Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor 37185</wicri:regionArea><wicri:noRegion>Villamayor 37185</wicri:noRegion></affiliation></author><author><name sortKey="Baker, Scott E" sort="Baker, Scott E" uniqKey="Baker S" first="Scott E" last="Baker">Scott E. Baker</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="I22">Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation wicri:level="2"><nlm:aff id="I9">DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Genome Biology</title><idno type="ISSN">1465-6906</idno><idno type="eISSN">1465-6914</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus <italic>Hypocrea</italic>/<italic>Trichoderma</italic>.</p></sec><sec><title>Results</title><p>Here we report an analysis of the genome sequences of the two biocontrol species <italic>Trichoderma atroviride </italic>(teleomorph <italic>Hypocrea atroviridis</italic>) and <italic>Trichoderma virens </italic>(formerly <italic>Gliocladium virens</italic>, teleomorph <italic>Hypocrea virens</italic>), and a comparison with <italic>Trichoderma reesei </italic>(teleomorph <italic>Hypocrea jecorina</italic>). These three <italic>Trichoderma </italic>species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to <italic>T. reesei </italic>or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that <italic>T. reesei </italic>and <italic>T. virens </italic>are derived relative to <italic>T. atroviride</italic>. The mycoparasitism-specific genes thus arose in a common <italic>Trichoderma </italic>ancestor but were subsequently lost in <italic>T. reesei</italic>.</p></sec><sec><title>Conclusions</title><p>The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Taylor, Tn" uniqKey="Taylor T">TN Taylor</name></author><author><name sortKey="Hass, H" uniqKey="Hass H">H Hass</name></author><author><name sortKey="Kerp, H" uniqKey="Kerp H">H Kerp</name></author><author><name sortKey="Krings, M" uniqKey="Krings M">M Krings</name></author><author><name sortKey="Hanlin, Rt" uniqKey="Hanlin R">RT Hanlin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vincent, C" uniqKey="Vincent C">C Vincent</name></author><author><name 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Coutinho</name><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><name sortKey="Le Crom, Stephane" sort="Le Crom, Stephane" uniqKey="Le Crom S" first="Stéphane" last="Le Crom">Stéphane Le Crom</name><name sortKey="Margeot, Antoine" sort="Margeot, Antoine" uniqKey="Margeot A" first="Antoine" last="Margeot">Antoine Margeot</name></country><country name="Australie"><noRegion><name sortKey="Deshpande, Nandan" sort="Deshpande, Nandan" uniqKey="Deshpande N" first="Nandan" last="Deshpande">Nandan Deshpande</name></noRegion><name sortKey="Nevalainen, Helena" sort="Nevalainen, Helena" uniqKey="Nevalainen H" first="Helena" last="Nevalainen">Helena Nevalainen</name><name sortKey="Packer, Nicolle" sort="Packer, Nicolle" uniqKey="Packer N" first="Nicolle" last="Packer">Nicolle Packer</name></country><country name="Allemagne"><region name="Berlin"><name sortKey="Von Dohren, Hans" sort="Von Dohren, Hans" uniqKey="Von Dohren H" first="Hans" last="Von Döhren">Hans Von Döhren</name></region></country><country name="Danemark"><region name="Jutland du Nord"><name sortKey="Lubeck, Mette" sort="Lubeck, Mette" uniqKey="Lubeck M" first="Mette" last="Lübeck">Mette Lübeck</name></region><name sortKey="Lubeck, Peter S" sort="Lubeck, Peter S" uniqKey="Lubeck P" first="Peter S" last="Lübeck">Peter S. Lübeck</name></country><country name="Italie"><noRegion><name sortKey="Perrone, Giancarlo" sort="Perrone, Giancarlo" uniqKey="Perrone G" first="Giancarlo" last="Perrone">Giancarlo Perrone</name></noRegion></country><country name="Pays-Bas"><region name="Gueldre (province)"><name sortKey="Tamayo Ramos, Juan Antonio" sort="Tamayo Ramos, Juan Antonio" uniqKey="Tamayo Ramos J" first="Juan Antonio" last="Tamayo-Ramos">Juan Antonio Tamayo-Ramos</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|wiki= Wicri/Asie
|area= AustralieFrV1
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|clé= PMC:3218866
|texte= Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
}}
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